NextFlow

In this tutorial, we’ll be using the Gadi HPC system at NCI to run Nextflow workflows.

• What is Nextflow?
  • Process-Oriented Workflow Execution
  • A Simple Nextflow Script
  • Running the Workflow
• Hello World
  • Process Block
  • Output Directive
  • Script Directive
  • Workflow Block
• Blocks and Directives
  • What are Blocks?
  • What are Directives?
  • Key Differences
• Publish Outputs
  • Exercise
• Resume Workflow
• Variable Inputs
  • Exercise
• Channels
  • Unique Output Files
• Multi-step Workflows
  • Collect() Operator
• Multi-inputs to a Process
• Multi-outputs from a Process
• Modules
  • Exercise

GitHub Repo: https://github.com/NCI900-Training-Organisation/intro-to-nextflow.git